Bering.plotting.Plot_Classification
- Bering.plotting.Plot_Classification(bg, cell_name, n_neighbors=10, min_prob=0.3, zoomout_scale=8.0)[source]
Plot node classfication results on the original data and predicted data.
- Parameters:
bg (BrGraph) – Bering Graph object
cell_name (str) – Name of the cell to plot
n_neighbors (int) – Number of neighbors to build the knn graph
min_prob (float) – Minimum probability threshold to classify a valid cell type (otherwise background)
zoomout_scale (float) – Zoom out scale (relative to the cell diameter) to show the region
- Returns:
: - df_window_raw:
pd.DataFrameDataFrame of the raw spots in the window
- df_window_pred:
pd.DataFrame DataFrame of the predicted spots in the window
- df_window_pred:
- predictions:
np.ndarray Array of predicted labels
- predictions: